PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024991452.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

MYB

Protein Properties

Length: 385aa MW: 43954.9 Da PI: 6.9833

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024991452.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	43.4	7.8e-14	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEd +l+ + ++G+g +W + +++ g++R++k+c++rw++yl XP_024991452.1 14 RGPWSPEEDAKLKGFIDRYGTGgNWIALPHKAGLKRCGKSCRLRWLNYL 62 89*********************************************97 PP
2	Myb_DNA-binding	38	3.7e-12	69	111	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +T +Ed ++ + + G++ W+ Ia+ ++ gRt++++k++w++ XP_024991452.1 69 GEFTDDEDRIICSLYASIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111 78*****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 385 aa Download sequence
MGRAPCCDKE NVKRGPWSPE EDAKLKGFID RYGTGGNWIA LPHKAGLKRC GKSCRLRWLN 60 YLRPNIKHGE FTDDEDRIIC SLYASIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLLAM 120 LPSFQKKPSF FPSISLQSPP PYRSDQFLTS NFSPFPTYST PPNFMNHNMN SLLTTAAAAT 180 TLVQDHINIT HLSPPPPPPP PPDINSLISL ITNNDNCFYL GFQAEDHQNM YNSPMGYHYL 240 TSDVKESMLM FGSGGGDGHE VSATGSSSEG GSCMSQISYG DYNKDHNIQK QQQHHHQIKQ 300 EDRFALQGFG DQSQSFFINH NYTDQKPKVD YNLKNYEKPL DSNHLEEVKQ LIIGNNRSSY 360 WFNNDDDEYK TTHDDDDHKE IRYHY

Sequence ? help Back to Top

Protein Sequence Length: 385 aa Download sequence

MGRAPCCDKE NVKRGPWSPE EDAKLKGFID RYGTGGNWIA LPHKAGLKRC GKSCRLRWLN  60
YLRPNIKHGE FTDDEDRIIC SLYASIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLLAM  120
LPSFQKKPSF FPSISLQSPP PYRSDQFLTS NFSPFPTYST PPNFMNHNMN SLLTTAAAAT  180
TLVQDHINIT HLSPPPPPPP PPDINSLISL ITNNDNCFYL GFQAEDHQNM YNSPMGYHYL  240
TSDVKESMLM FGSGGGDGHE VSATGSSSEG GSCMSQISYG DYNKDHNIQK QQQHHHQIKQ  300
EDRFALQGFG DQSQSFFINH NYTDQKPKVD YNLKNYEKPL DSNHLEEVKQ LIIGNNRSSY  360
WFNNDDDEYK TTHDDDDHKE IRYHY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57620.1	1e-75	MYB family protein