PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024991459.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

MYB

Protein Properties

Length: 910aa MW: 103579 Da PI: 6.624

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024991459.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	33.2	1.2e-10	424	469	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r++WT +Ed++l+ +v+ G +W Ia +g++Rt+ qc sr+q XP_024991459.1 424 RQSWTVQEDKKLLYVVQNEGFSNWIDIAGLLGTNRTPFQCLSRFQR 469 899*****************************************96 PP
2	Myb_DNA-binding	41.4	3.2e-13	477	521	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 ++ WTt Ede l av ++G +W ++a+t+ gRt+ qc +rw k XP_024991459.1 477 KNEWTTPEDEELRIAVSEYGETNWQLVASTLE-GRTGTQCSNRWKK 521 679***************************.*********98 PP
3	Myb_DNA-binding	46.5	8.6e-15	531	575	2	47
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 g+W ++Ed++l+ av+++G ++W +Iar ++ gRt qc++rw + XP_024991459.1 531 GKWAPDEDKRLKIAVRLFGAKNWYKIARFVP-GRTQVQCRERWVNC 575 79***************************.*********986 PP
4	Myb_DNA-binding	50	6.7e-16	583	627	2	48
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 + WT+eEd++l++a++++G W++Ia++++ Rt+ qc+ rw +l XP_024991459.1 583 NEWTEEEDLKLKEAIAEHGYS-WSKIAACIP-PRTDSQCRRRWKVLL 627 57***************99.*****.9********9875 PP

Sequence ? help Back to Top
Protein Sequence Length: 910 aa Download sequence
MSYHDEEESS GSDSDTGFAE DMEALRRACS VTGVDDAVDD LPKSSTADDD HDDATYASED 60 EDIELLRRIQ QRFSVPTTDV GNEQQPVSMR PLNTILPSGL SEENDDYGDD FETLRAIQRR 120 FSQYNDSMNN SMESSLQSSE QVGATNIDLE KESSTNFFVK SINNGQGFPD CVDGRATDQN 180 LDFPSNITPD ILHENVSEGH EPGSELVPVT DCGFPRSAQA FVEAIKKNRT CQKFIRSKLV 240 QIEARMEENK KLRERVKILK DFQVACRKRT GRALSQKKDA RIQLISVPKQ RANAKGKDKN 300 THAIYQGPAE NSHVAIYRDV ISKYPFSLNR EPWLKEDKEN LMKGIKQQFQ ETLMHNLFSA 360 GDVDSRYLDS MIAKIGDHEI SPEEIRLFVP RVNWEHLSSM YVQGRSGPEC ESRWMNCEDP 420 LINRQSWTVQ EDKKLLYVVQ NEGFSNWIDI AGLLGTNRTP FQCLSRFQRS LNASIIKNEW 480 TTPEDEELRI AVSEYGETNW QLVASTLEGR TGTQCSNRWK KSLNPLRERV GKWAPDEDKR 540 LKIAVRLFGA KNWYKIARFV PGRTQVQCRE RWVNCLDPSL NMNEWTEEED LKLKEAIAEH 600 GYSWSKIAAC IPPRTDSQCR RRWKVLLPHE VPMLQAARKM KKAALISNFV DREEERPALT 660 ASDFIPPPLL IKSAPKVNEA RLSTKNKRQR LPPEHHVHDT SSGTVVVVRS RRARKVTHTE 720 KVLRLTDVED NADVTDNGRW KNKPTSLKNK SSILVRGTEL HNGEGNRASV GDNAEMKGEV 780 AGKQKRKRRG KKEDGEILEA DAISKENTMR RANEGCELAE SEVDDVSYDP CLLEVLANEP 840 CSCREMIEST SGKVEKTYKR SRKRANVDGD KRSSVVRKEG SEILVDEEAE DGETLASFYK 900 KVKKRRLEGR

Sequence ? help Back to Top

Protein Sequence Length: 910 aa Download sequence

MSYHDEEESS GSDSDTGFAE DMEALRRACS VTGVDDAVDD LPKSSTADDD HDDATYASED  60
EDIELLRRIQ QRFSVPTTDV GNEQQPVSMR PLNTILPSGL SEENDDYGDD FETLRAIQRR  120
FSQYNDSMNN SMESSLQSSE QVGATNIDLE KESSTNFFVK SINNGQGFPD CVDGRATDQN  180
LDFPSNITPD ILHENVSEGH EPGSELVPVT DCGFPRSAQA FVEAIKKNRT CQKFIRSKLV  240
QIEARMEENK KLRERVKILK DFQVACRKRT GRALSQKKDA RIQLISVPKQ RANAKGKDKN  300
THAIYQGPAE NSHVAIYRDV ISKYPFSLNR EPWLKEDKEN LMKGIKQQFQ ETLMHNLFSA  360
GDVDSRYLDS MIAKIGDHEI SPEEIRLFVP RVNWEHLSSM YVQGRSGPEC ESRWMNCEDP  420
LINRQSWTVQ EDKKLLYVVQ NEGFSNWIDI AGLLGTNRTP FQCLSRFQRS LNASIIKNEW  480
TTPEDEELRI AVSEYGETNW QLVASTLEGR TGTQCSNRWK KSLNPLRERV GKWAPDEDKR  540
LKIAVRLFGA KNWYKIARFV PGRTQVQCRE RWVNCLDPSL NMNEWTEEED LKLKEAIAEH  600
GYSWSKIAAC IPPRTDSQCR RRWKVLLPHE VPMLQAARKM KKAALISNFV DREEERPALT  660
ASDFIPPPLL IKSAPKVNEA RLSTKNKRQR LPPEHHVHDT SSGTVVVVRS RRARKVTHTE  720
KVLRLTDVED NADVTDNGRW KNKPTSLKNK SSILVRGTEL HNGEGNRASV GDNAEMKGEV  780
AGKQKRKRRG KKEDGEILEA DAISKENTMR RANEGCELAE SEVDDVSYDP CLLEVLANEP  840
CSCREMIEST SGKVEKTYKR SRKRANVDGD KRSSVVRKEG SEILVDEEAE DGETLASFYK  900
KVKKRRLEGR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	620	641	RRRWKVLLPHEVPMLQAARKMK
2	685	690	KNKRQR
3	786	793	RKRRGKKE
4	900	907	KKVKKRRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18100.1	0.0	MYB family protein