PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024991487.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

WRKY

Protein Properties

Length: 272aa MW: 30701.8 Da PI: 8.9169

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024991487.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	74.6	1.2e-23	122	182	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 +Dg++WrKYGqK++ +s+fpr Y+rCt++ gC++ k+v++ +++ + ++itY g+H+++ XP_024991487.1 122 EDGHAWRKYGQKKILDSKFPRCYFRCTHKyvhGCKALKQVQKLEDESNKFHITYFGHHTCQ 182 8*************************9999*************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 272 aa Download sequence
MERNKKKLVE TLTRGRNSAM RLQNLLRQKV HDDGLVSVDD LVTEISRSFS GSLLVLNSCN 60 SGKFCGVPVN PHLGLACSLN RVPEVYSGNT AKNPAQTTKE RRGCYKRRKT IDSWIEISGR 120 IEDGHAWRKY GQKKILDSKF PRCYFRCTHK YVHGCKALKQ VQKLEDESNK FHITYFGHHT 180 CQTPNASSHP GVVLDSKDFT NHCYLPSSPS TITSIQIDPS FGKEDPSDNV SSGNDAQSSP 240 PLLWKEILVN DLDIFKKDYV LTAISFDDAL YF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	106	133	KRRKTIDSWIEISGRIEDGHAWRKYGQK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56400.1	2e-35	WRKY family protein