PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024991514.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family GRAS
Protein Properties Length: 575aa    MW: 62280.1 Da    PI: 4.8797
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024991514.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS4549.8e-1392015731374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     lv++L++cAeav+++dl+ a++l+++   la +++ +m+++a+yf+eALa+r++r    l+++ p  + +    ++    +  f+e++P+lkf+h
  XP_024991514.1 201 LVHTLMACAEAVQQDDLKVAETLVKQAGILAVSQAGAMRKVATYFAEALARRIYR----LCHKTPQDSPA---FQDL--LQMHFYETCPYLKFAH 286
                     689****************************************************....44333322222...3333..3345************ PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190
                     +taNqaIlea++g++rvH+iDf+++qG+QWpaL+qaLa Rp+gpp++R+Tg+g+p+ ++++ l+e+g++La++A++++v+fe++ ++a++l+dle
  XP_024991514.1 287 FTANQAILEAFAGKKRVHVIDFSMKQGMQWPALMQALALRPGGPPTFRLTGIGPPSGDNTDHLQEVGWKLAQLADTIHVEFEYRGFLAESLADLE 381
                     ********************************************************99************************************* PP

            GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak........... 274
                     + +L++++gE++aVn+v++lh+ll++++++e+    vL++vk+++P++++vveqea+hn++ Flerf+e+l+yys+lfdsle++           
  XP_024991514.1 382 PAMLDLREGEVVAVNSVFELHQLLARPGAVEK----VLSAVKEMKPEILTVVEQEANHNGPVFLERFTESLHYYSTLFDSLESSgnggggvdggg 472
                     ********************************....*********************************************9999********** PP

            GRAS 275 lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLv 368
                     ++++s++++ +++++lg++i+nvvaceg +r+erh+tl +W+ r+e++GF++v+l+++a+kqa++ll+ ++ +dgyrvee++g+l+lgW++rpL+
  XP_024991514.1 473 IAAASNQDKIMSEVYLGKQICNVVACEGPDRVERHQTLTQWKTRFESSGFEAVHLGSNAYKQASMLLALFAgGDGYRVEENNGCLMLGWHTRPLI 567
                     99********************************************************************************************* PP

            GRAS 369 svSaWr 374
                     ++SaW+
  XP_024991514.1 568 TTSAWK 573
                     *****8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 575 aa     Download sequence    
MKRDYPQQNY TFFNGASSIS AAAGSGSGSS GAGFSDLRSE VTGKSKMWDE EQDAGVDELL  60
AVLGYKVKSS DMADVAQKIE HLEGVLGNDD GLSQLASDSV HYNPSDLSSW LESMICELNP  120
TVQPLDDSFV NGVTPTGTTA VTSLAVDSSS GFVDDLQAIP GNAIYPPTKK QKPSSPSSGA  180
SSSYQPNPIV LVDSQENGIR LVHTLMACAE AVQQDDLKVA ETLVKQAGIL AVSQAGAMRK  240
VATYFAEALA RRIYRLCHKT PQDSPAFQDL LQMHFYETCP YLKFAHFTAN QAILEAFAGK  300
KRVHVIDFSM KQGMQWPALM QALALRPGGP PTFRLTGIGP PSGDNTDHLQ EVGWKLAQLA  360
DTIHVEFEYR GFLAESLADL EPAMLDLREG EVVAVNSVFE LHQLLARPGA VEKVLSAVKE  420
MKPEILTVVE QEANHNGPVF LERFTESLHY YSTLFDSLES SGNGGGGVDG GGIAAASNQD  480
KIMSEVYLGK QICNVVACEG PDRVERHQTL TQWKTRFESS GFEAVHLGSN AYKQASMLLA  540
LFAGGDGYRV EENNGCLMLG WHTRPLITTS AWKLR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.10.0GRAS family protein