PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024991578.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family C2H2
Protein Properties Length: 303aa    MW: 33295.3 Da    PI: 6.6701
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024991578.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.90.0015123145123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     y+C+ C++ F++   L  H  +H
  XP_024991578.1 123 YECKTCNRAFPSFQALGGHRASH 145
                     99**********99999998887 PP
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    
MDFMPESTAA RRGDRAHQII TGKHTEHQIP CSPFTTVEAA SSSYNGGCML SYYTTGQSST  60
MLAEEEEEDM ANCLIMLAQS VSPPKENKLD LHSQKTEKIK NRRLTEIASS TAGDGGKSGF  120
HNYECKTCNR AFPSFQALGG HRASHKKPKL TIEDRNSVSI KMEFSGEHQP ELLVEYEENK  180
INTNNINSPS PPPGFIQSGY KNSKGKVHEC SICGSEFLSG QALGGHMRRH RTAPPPSNQI  240
VVSMNIDDRI GHHITEKSPV LSLDLNLPAP EVIDDVHSNF QLTASSSQQP LVFPATALVD  300
CHY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.14e-49C2H2 family protein