PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024991708.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

G2-like

Protein Properties

Length: 379aa MW: 42399.6 Da PI: 8.3811

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024991708.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	99.4	2.5e-31	226	281	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W++eLH+rF++a++qLGG+++AtPk+i+elmkv+gLt++++kSHLQkYRl+ XP_024991708.1 226 KERRCWSTELHRRFLHALQQLGGAHVATPKQIRELMKVDGLTNDEIKSHLQKYRLH 281 68****************************************************97 PP
2	Myb_DNA-binding	42.3	1.7e-13	228	279	1	48
TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...tWktIartmg.kgRtlkqcksrwqkyl 48 r W+te++ ++++a +qlGg t+k I + m g+t ++ks++qky+ XP_024991708.1 228 RRCWSTELHRRFLHALQQLGGAhvaTPKQIRELMKvDGLTNDEIKSHLQKYR 279 568***************99***************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 379 aa Download sequence
MVMNNDPSDV RDKMQKYQEY IGALEEERRK IRVFERELPL CLELVSKAIE RCRQEMSRDC 60 FNVQSDQYSE QTSNEGPVLE EFIPIKRNLF TNEDEGEGQQ QQEQQLSHKS KNICSQDKSS 120 PFSLKPDWLT SAQLSIQSPD PPIEEDLLSK KLFATEVNRN GYGDYHPFKK KKSSCAALTT 180 GVEKSLTCAA MVPTAAVSSS VDTDGGGGDG GGGGSKGEDK GKSNIKERRC WSTELHRRFL 240 HALQQLGGAH VATPKQIREL MKVDGLTNDE IKSHLQKYRL HTRRLNPTIH NNDPHTAQLV 300 VVGRIWMPPL EYTRKAASFP PSGNTNNAKV VYAPIASLPP SITASRYKTR QCKQQSNYEE 360 KGSQSHSNSP STTTISPAF

Sequence ? help Back to Top

Protein Sequence Length: 379 aa Download sequence

MVMNNDPSDV RDKMQKYQEY IGALEEERRK IRVFERELPL CLELVSKAIE RCRQEMSRDC  60
FNVQSDQYSE QTSNEGPVLE EFIPIKRNLF TNEDEGEGQQ QQEQQLSHKS KNICSQDKSS  120
PFSLKPDWLT SAQLSIQSPD PPIEEDLLSK KLFATEVNRN GYGDYHPFKK KKSSCAALTT  180
GVEKSLTCAA MVPTAAVSSS VDTDGGGGDG GGGGSKGEDK GKSNIKERRC WSTELHRRFL  240
HALQQLGGAH VATPKQIREL MKVDGLTNDE IKSHLQKYRL HTRRLNPTIH NNDPHTAQLV  300
VVGRIWMPPL EYTRKAASFP PSGNTNNAKV VYAPIASLPP SITASRYKTR QCKQQSNYEE  360
KGSQSHSNSP STTTISPAF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25550.1	4e-74	G2-like family protein