PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024991794.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

C2H2

Protein Properties

Length: 463aa MW: 51180.4 Da PI: 7.3448

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024991794.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.2	0.0011	118	140	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+C+++F + ++ H t+ XP_024991794.1 118 FECPICSRPFGSEEEVSDHVETC 140 89************999999887 PP

Sequence ? help Back to Top
Protein Sequence Length: 463 aa Download sequence
MGDMKDKMKG FMKKFNNSLS SSSSSSSGKF KGQGRVLGSS SSSISSAPVN SSSNRPTTQV 60 QDPKPVPSPR PSSSTSVVLP KKPISPDQPT KSTEGFDPFD SLITTGKRNK NGYDLRVFEC 120 PICSRPFGSE EEVSDHVETC LSNNESESKT DNSHGKEETR RELETCIGTY VSGKPSDGSV 180 EIVLKLLKNI AKEPDNVKFR KIRLGNPKIK EAIADVAGGL DLLECVGFEL KEDEGEMWAV 240 MEAASSEKIK LINQAVCLLE PPKTEIPASK TVPAKVVEPE EVKKVERQTR VFFSVPESVA 300 AKIELPDSFY RLSIDEVKRE AEMRRKKLAE SQLLIPKSYK EKQAKAARKR HAKTVIRIQF 360 PDGVVLQAFF NPREPTTALY EFVSASLKDP SLEFELLHPI VIKRRVIPNF GEQSTTLEEE 420 DLVPSALIKF RPKETDSVVF TGLCNELLEI IEPLVSESAV ASQ

Sequence ? help Back to Top

Protein Sequence Length: 463 aa Download sequence

MGDMKDKMKG FMKKFNNSLS SSSSSSSGKF KGQGRVLGSS SSSISSAPVN SSSNRPTTQV  60
QDPKPVPSPR PSSSTSVVLP KKPISPDQPT KSTEGFDPFD SLITTGKRNK NGYDLRVFEC  120
PICSRPFGSE EEVSDHVETC LSNNESESKT DNSHGKEETR RELETCIGTY VSGKPSDGSV  180
EIVLKLLKNI AKEPDNVKFR KIRLGNPKIK EAIADVAGGL DLLECVGFEL KEDEGEMWAV  240
MEAASSEKIK LINQAVCLLE PPKTEIPASK TVPAKVVEPE EVKKVERQTR VFFSVPESVA  300
AKIELPDSFY RLSIDEVKRE AEMRRKKLAE SQLLIPKSYK EKQAKAARKR HAKTVIRIQF  360
PDGVVLQAFF NPREPTTALY EFVSASLKDP SLEFELLHPI VIKRRVIPNF GEQSTTLEEE  420
DLVPSALIKF RPKETDSVVF TGLCNELLEI IEPLVSESAV ASQ