PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024991857.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

MYB

Protein Properties

Length: 228aa MW: 26901.4 Da PI: 7.3894

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024991857.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	37.7	4.8e-12	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT +Ed +l + G +W+++++ g+ R++k+c++rw +yl XP_024991857.1 14 RGPWTIDEDHKLMTFILNNGIQCWRLVPKLAGLMRCGKSCRLRWINYL 61 89********************************************97 PP
2	Myb_DNA-binding	53.9	4.2e-17	67	110	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg++T+ E++ +++++ +lG++ W++Ia+ ++ gRt++++k++w++ XP_024991857.1 67 RGAFTEAEEDMIIQLHSRLGNR-WSKIAAQFP-GRTDNEIKNHWNT 110 89******************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 228 aa Download sequence
MGRQPCCEKN GLRRGPWTID EDHKLMTFIL NNGIQCWRLV PKLAGLMRCG KSCRLRWINY 60 LRPDLKRGAF TEAEEDMIIQ LHSRLGNRWS KIAAQFPGRT DNEIKNHWNT RIKKKMKFLG 120 LDPRTHSPIE QHHNPDTIIK RENNESTSSR NSFNNYDIRE EKPDILNDKT PTIEDIGLMM 180 MSHDHDHEDH HHRLESLNTC FELELPQNWI DNPGFQWDVF NDPGLGFH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G14340.1	2e-78	MYB family protein