PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024991887.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family C3H
Protein Properties Length: 385aa    MW: 43333.5 Da    PI: 7.6014
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024991887.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.22.9e-08135155526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      C +f+r G C++Gd+C FaHg
  XP_024991887.1 135 VCADFRR-GSCSRGDSCDFAHG 155
                     799****.*************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    
MDGVCADEEH KFQSAHQLYL ATKKPFRDLE IPPRKLLTRR LAATLSSEQS MDMIYHQLQN  60
DSPREETLFQ KFLPYNSGLD DDSDPYASDH FRMYEFKIRK CTRSRSHDWT DCPFAHPGEK  120
ARRRCPRRFN YSGTVCADFR RGSCSRGDSC DFAHGVFECW LHPSRYRTEA CKDGKNCQRK  180
ICFFAHTPGQ LRSLSPAETV VSPNKHVNSG HCAYCRCHPG IHHTNSPTSI LDMDKLSPPT  240
SPPFSPAQPG AGFSPISRFS DRLARTESCG MTQLGNGSSS YKDSKNDILI PQAIKDLMQS  300
MKSMNMNAIE APNRNSMWMD SFIGGDDQSL FAFSPSTSSP CSSGLGRAFP RDCNFGMNNL  360
NEDKFVNDQN STAGPDLDWV NDLLT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03790.14e-70C3H family protein