PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024991888.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family C3H
Protein Properties Length: 338aa    MW: 38360.9 Da    PI: 7.404
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024991888.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.42.5e-08135155526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      C +f+r G C++Gd+C FaHg
  XP_024991888.1 135 VCADFRR-GSCSRGDSCDFAHG 155
                     799****.*************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    
MDGVCADEEH KFQSAHQLYL ATKKPFRDLE IPPRKLLTRR LAATLSSEQS MDMIYHQLQN  60
DSPREETLFQ KFLPYNSGLD DDSDPYASDH FRMYEFKIRK CTRSRSHDWT DCPFAHPGEK  120
ARRRCPRRFN YSGTVCADFR RGSCSRGDSC DFAHGVFECW LHPSRYRTEA CKDGKNCQRK  180
ICFFAHTPGQ LRSLSPAETV VSPNKHVNSG HCAYCRCHPE SCGMTQLGNG SSSYKDSKND  240
ILIPQAIKDL MQSMKSMNMN AIEAPNRNSM WMDSFIGGDD QSLFAFSPST SSPCSSGLGR  300
AFPRDCNFGM NNLNEDKFVN DQNSTAGPDL DWVNDLLT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03790.18e-70C3H family protein