PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024991924.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

C3H

Protein Properties

Length: 598aa MW: 65615.2 Da PI: 8.9079

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024991924.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21.2	5.2e-07	236	256	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ G C Gd C +aHg XP_024991924.1 236 PCPEFRK-GSCVNGDACEYAHG 256 8****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 598 aa Download sequence
MEGDKFQEKK FRVLLKCSNL LELAASDDVS EFVSEVERKK IALDEIGFWY GRRNSSKGKM 60 GFDERTPLMI ASVYGSIRVL KYLIGSKRID VNKTSGSDGV TALHCAAAGG SLLSVEVVKL 120 LLDAGANITL TDANGNKPGD LIARGIKSAM RKALEMLLKG FVIEEIVTAK KEYPIDATLP 180 DINNGLYGSD EFRMYTFKVK PCSRAYTHDW TECPFVHPGE NARRRDPKKY NYSCVPCPEF 240 RKGSCVNGDA CEYAHGVFES WLHPAQYKTR LCKDETGCAR KVCFFAHKIE ELRPLYASTG 300 SAIPSPKSGS IEMGSMSPTP SPMAHGSTPP MSPSIAPVSP MNGWQNKMNH LTPPVLQLSG 360 SRLRTALNAR EFELQSLRTQ QKERQQMLDD LSANHYSNRF GELNPTNLDD VFGSFDPSIL 420 SSITNGATQL QSPNGHQHRQ NPNQLRGNYV NSPMRKPASF AFDSSAAVAQ AVMNSRSGAF 480 SKQRSQSFID RGAVTTGAPF SQWGSADGKL EWGFNGEEAN KLKKSASFGF RNGVPVSVGH 540 EPDVSWVNTL VKDVSSVGVG LYSSSEKQRY GGRGGGGGGE KVPQWVEQMF IEQERLVA

Sequence ? help Back to Top

Protein Sequence Length: 598 aa Download sequence

MEGDKFQEKK FRVLLKCSNL LELAASDDVS EFVSEVERKK IALDEIGFWY GRRNSSKGKM  60
GFDERTPLMI ASVYGSIRVL KYLIGSKRID VNKTSGSDGV TALHCAAAGG SLLSVEVVKL  120
LLDAGANITL TDANGNKPGD LIARGIKSAM RKALEMLLKG FVIEEIVTAK KEYPIDATLP  180
DINNGLYGSD EFRMYTFKVK PCSRAYTHDW TECPFVHPGE NARRRDPKKY NYSCVPCPEF  240
RKGSCVNGDA CEYAHGVFES WLHPAQYKTR LCKDETGCAR KVCFFAHKIE ELRPLYASTG  300
SAIPSPKSGS IEMGSMSPTP SPMAHGSTPP MSPSIAPVSP MNGWQNKMNH LTPPVLQLSG  360
SRLRTALNAR EFELQSLRTQ QKERQQMLDD LSANHYSNRF GELNPTNLDD VFGSFDPSIL  420
SSITNGATQL QSPNGHQHRQ NPNQLRGNYV NSPMRKPASF AFDSSAAVAQ AVMNSRSGAF  480
SKQRSQSFID RGAVTTGAPF SQWGSADGKL EWGFNGEEAN KLKKSASFGF RNGVPVSVGH  540
EPDVSWVNTL VKDVSSVGVG LYSSSEKQRY GGRGGGGGGE KVPQWVEQMF IEQERLVA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	571	579	GGRGGGGGG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40140.2	0.0	C3H family protein