PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024992000.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family WRKY
Protein Properties Length: 344aa    MW: 38475.5 Da    PI: 5.7529
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024992000.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY86.23e-27125186159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+W KYGqK++ g+++pr+YYrCt++   gC ++k+v+r+++dp++++i Y+g+H+++
  XP_024992000.1 125 LDDGYSWSKYGQKDILGAKHPRGYYRCTYRhseGCLATKQVQRTEDDPNIFNISYRGSHTCN 186
                     59**************************998999**************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    
MDEKRVIESL TQGKEYAKQL QIHLNDPNSS SHQTQQILIN NILNSYDKSL SLLTTPNAIG  60
TQSHLHAGIG ITKLESQVFS TQDSDHEFKD LQDHKDFSAK RNPSSMEKWK NEVKVRADME  120
VEEGLDDGYS WSKYGQKDIL GAKHPRGYYR CTYRHSEGCL ATKQVQRTED DPNIFNISYR  180
GSHTCNLGTN TTSTIPLPLP SPPQSIIQHL QQENQQAPRC PEFLLDLQTC DKPTTENIKT  240
SSFQFPSTSN NSIIFPTLDN AFDSNTSPSF ISPTTSVPAY FTMSQPRVSV VRNISSPVAA  300
KSEVNNVVSV ATSSTSSHNV DVGFQFGQME FGNDFSFDNS IFFD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24110.12e-38WRKY family protein