PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024992012.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

bHLH

Protein Properties

Length: 173aa MW: 19789.7 Da PI: 9.5603

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024992012.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	20.6	8.3e-07	15	53	7	48
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAv 48 + E++RRdr+++ f++L +ll + p +++s + L +A+ XP_024992012.1 15 AKEKQRRDRMKDLFSTLASLLHLQ---PYERMSLPDFLDRAT 53 67*******************998...777777777777775 PP

Sequence ? help Back to Top
Protein Sequence Length: 173 aa Download sequence
MARRSSCSTL RPPAAKEKQR RDRMKDLFST LASLLHLQPY ERMSLPDFLD RATSSLVNWK 60 ERVEGLKVRK EELEKEVGSR SNRSNTMQQQ QQVVRVMEMD FKLEANLIIN NNNKKVEPYQ 120 ILSVIEQGGA EITSSSFSTV GHQTYCTIHA KAFQARLGFD VALIESKLLE LVC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10586.1	4e-20	bHLH family protein