PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024992179.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

C3H

Protein Properties

Length: 692aa MW: 76633.4 Da PI: 6.9286

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024992179.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.2	2.1e-06	100	126	3	26
S---SGGGGTS...--TTTTT-SS-SS CS zf-CCCH 3 telCrffartG...tCkyGdrCkFaHg 26 + lC+ a+tG C+y d+C+F+H+ XP_024992179.1 100 RNLCPMVAKTGkadSCPYNDKCRFSHD 126 56899999******************6 PP

Sequence ? help Back to Top
Protein Sequence Length: 692 aa Download sequence
MEATATEVTV GEPPKIPMEL PFPARKPVNE LSVEEMVAKS IVPVKKEFMC PAPNRLTSDN 60 NGPSGDAVPV PTTASAPVIK EKKSKRQLKR ERIQEKQSTR NLCPMVAKTG KADSCPYNDK 120 CRFSHDIEAF KDQKPADLEG ICPFEGDEGP CPYGLACRYL GTHKTDVALG TPNARKNAEV 180 NGLKKDVQRL LWKNKMKFPK ADATLKVLGL MGAAKSKKTP EADNGEENQT VSNGSNVTNG 240 NGCGETGTQP IVENECCPEV PEKVEDSNGA DDPRPLKKGK SLTDETCDSI KETNGASLTE 300 KDLDASGAQL ESLSTVGHIE TDKSLNLRPR EKKLIDFRDK LYLAPLTTVG NLPFRRVCKV 360 LGADITCGEM AMCTNLLQGQ AAEWALLRRH VSEDLFGVQI CGAYPDTVAR AAELIEQECT 420 VDFIDINMGC PIDAVVNKGA GSALLSKPMR MKNVIQAVST TVDIPITIKA RTSYFEGRSR 480 IDSVIADIGK WGANAATIHG RSRQQRYIKQ ADWEYIYQCT RKAPDTFQVL GNGDIFTFSD 540 WKKHKSDCPE LSSCMIARGA LVKPWLFTEI KEQRDWDISS GERLNILKDY VRFGLEHWGS 600 DTKGVETVRH FLLEWLSYTY RYVPLGLLEV IPQKLNWRPP AYYGRDDLET LMASESAVDW 660 IRISEMLLGK VPDGFTFSPK HKSNAFDKAE NG

Sequence ? help Back to Top

Protein Sequence Length: 692 aa Download sequence

MEATATEVTV GEPPKIPMEL PFPARKPVNE LSVEEMVAKS IVPVKKEFMC PAPNRLTSDN  60
NGPSGDAVPV PTTASAPVIK EKKSKRQLKR ERIQEKQSTR NLCPMVAKTG KADSCPYNDK  120
CRFSHDIEAF KDQKPADLEG ICPFEGDEGP CPYGLACRYL GTHKTDVALG TPNARKNAEV  180
NGLKKDVQRL LWKNKMKFPK ADATLKVLGL MGAAKSKKTP EADNGEENQT VSNGSNVTNG  240
NGCGETGTQP IVENECCPEV PEKVEDSNGA DDPRPLKKGK SLTDETCDSI KETNGASLTE  300
KDLDASGAQL ESLSTVGHIE TDKSLNLRPR EKKLIDFRDK LYLAPLTTVG NLPFRRVCKV  360
LGADITCGEM AMCTNLLQGQ AAEWALLRRH VSEDLFGVQI CGAYPDTVAR AAELIEQECT  420
VDFIDINMGC PIDAVVNKGA GSALLSKPMR MKNVIQAVST TVDIPITIKA RTSYFEGRSR  480
IDSVIADIGK WGANAATIHG RSRQQRYIKQ ADWEYIYQCT RKAPDTFQVL GNGDIFTFSD  540
WKKHKSDCPE LSSCMIARGA LVKPWLFTEI KEQRDWDISS GERLNILKDY VRFGLEHWGS  600
DTKGVETVRH FLLEWLSYTY RYVPLGLLEV IPQKLNWRPP AYYGRDDLET LMASESAVDW  660
IRISEMLLGK VPDGFTFSPK HKSNAFDKAE NG