PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024992232.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family MYB_related
Protein Properties Length: 76aa    MW: 8683.67 Da    PI: 5.1245
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024992232.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.83.9e-112769145
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
                     ++ ++++E  l+ +  k+ G + W++Ia +++ gRt+ ++k++w 
   XP_024992232.1 27 KLEFSEDEKNLITRMYKLVGDR-WSLIAGRIP-GRTAVEIKEYWT 69
                     678*****************99.*********.***********5 PP
Sequence ? help Back to Top
Protein Sequence    Length: 76 aa     Download sequence    
MAGLDKCSTS NDCSTKYTEE QSSRESKLEF SEDEKNLITR MYKLVGDRWS LIAGRIPGRT  60
AVEIKEYWTS RVSAND
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46410.14e-18MYB_related family protein