PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024992236.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

TCP

Protein Properties

Length: 344aa MW: 36379.1 Da PI: 8.1738

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024992236.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	129.2	4.1e-40	48	152	2	89
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg....... 88 ++k+ +++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pa++++tgt++++a+++ + s +ss+s+ s+g XP_024992236.1 48 PPKRASTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTsLNISLRSSGSTMSAGhtsylrn 142 689******************************************************************99987777777777555555555555 PP TCP 89 .........k 89 XP_024992236.1 143 gfsfvtsrpT 152 5555554440 PP

Sequence ? help Back to Top
Protein Sequence Length: 344 aa Download sequence
MDAQNQTEFR RLNFPLQLLE KRSSGGDAND TVAPPTDLQT AAKPKPSPPK RASTKDRHTK 60 VDGRGRRIRM PATCAARVFQ LTRELGHKSD GETIEWLLQQ AEPAVIAATG TGTIPANFTS 120 LNISLRSSGS TMSAGHTSYL RNGFSFVTSR PTASQYVSFS TSAGKQDSSC LDLRSIPTGI 180 ASSYMMQSSS GSIPASNTQT HAPQPTSFLM MGNPNSSTTT ATSHVISGDP TWNFPSGSNH 240 NSNDDNNVYR GSLGNNSSGG GGLHFMNFGT PMALLPGQQY GGGTVAAMEG QLGMLAALAP 300 FRPIFGVSTS DHLLNGLNPV NHCGGDHDPH HQHDQTSSDA GHHS

Sequence ? help Back to Top

Protein Sequence Length: 344 aa Download sequence

MDAQNQTEFR RLNFPLQLLE KRSSGGDAND TVAPPTDLQT AAKPKPSPPK RASTKDRHTK  60
VDGRGRRIRM PATCAARVFQ LTRELGHKSD GETIEWLLQQ AEPAVIAATG TGTIPANFTS  120
LNISLRSSGS TMSAGHTSYL RNGFSFVTSR PTASQYVSFS TSAGKQDSSC LDLRSIPTGI  180
ASSYMMQSSS GSIPASNTQT HAPQPTSFLM MGNPNSSTTT ATSHVISGDP TWNFPSGSNH  240
NSNDDNNVYR GSLGNNSSGG GGLHFMNFGT PMALLPGQQY GGGTVAAMEG QLGMLAALAP  300
FRPIFGVSTS DHLLNGLNPV NHCGGDHDPH HQHDQTSSDA GHHS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58100.1	9e-45	TCP family protein