PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024992270.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

AP2

Protein Properties

Length: 288aa MW: 32582.5 Da PI: 9.7917

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024992270.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	49.6	9.7e-16	102	151	2	55
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +++GVr +k +g+W +eIrd + + kr++lg++ taeeA + a ++++++ XP_024992270.1 102 RFRGVRLRK-WGKWCSEIRDpF-----SkKRIWLGTYETAEEALNVYNAKKEEFRF 151 79***99.******66.....44******************9999886 PP
2	AP2	26.2	2e-08	201	233	4	43
AP2 4 kGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAa 43 kGVr+ k +grW rd + k+ ++++g+f+t+eeA XP_024992270.1 201 KGVRRTK-SGRWN---RDpF----KKSQVWVGTFDTEEEAS 233 9*888.8...8855....25********99995 PP

Sequence ? help Back to Top
Protein Sequence Length: 288 aa Download sequence
MIVCDCSAMA EHRGGMKLGN SGEDDNKEHV EATVTCPRKI RVILSDPDAT DSSSDEGGDS 60 ERSSPRRIVH EIVLGVRAGD KDGDEVLKRS DSVDQTQPER KRFRGVRLRK WGKWCSEIRD 120 PFSKKRIWLG TYETAEEALN VYNAKKEEFR FRERQSGQNQ PKTRTESKKQ SSIRVSKGVN 180 NSLNGEEIVK LGEDPTRKLR KGVRRTKSGR WNRDPFKKSQ VWVGTFDTEE EASNGFESKK 240 LEVGLKVTRF DSECGASLKT PKIETLSFTT TSMAVDGKEE NKPAFRFG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68550.1	2e-18	ERF family protein