PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024992274.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family MYB_related
Protein Properties Length: 257aa    MW: 28990 Da    PI: 9.8703
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024992274.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.42.5e-11109153347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT++E+  ++ + ++lG+g+W+ I++     Rt+ q+ s+ qky
   XP_024992274.1 109 PWTEDEHMSFLIGLEKLGKGDWRGISKNYVPSRTPTQVASHAQKY 153
                      8**************************9999*************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    
MMTKEPFMGD CAHCGQSAHD SRACNNGKVG SLKLFGVRID PKSHQLHGKE KGDDRHGSVN  60
CIGNLIRKCK SMESLEACNI DPSSIDRGYQ SDGPPDRSHN AYNKTKGVPW TEDEHMSFLI  120
GLEKLGKGDW RGISKNYVPS RTPTQVASHA QKYFIRVNTT REKIKRRSSL FDMPFQESHM  180
VPRAPVPISL RPPVSPLART YEIQDFNYRS RMIGYTSSRY KQKFGDPKCP LALPFVPMAS  240
YPNQDRVCAV NRHGVPH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56840.12e-43MYB_related family protein