PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024992319.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family NF-YA
Protein Properties Length: 308aa    MW: 34549.9 Da    PI: 9.5553
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024992319.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA964.1e-30134190158
       CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                     dep++VNaKQy++I++RR +Rak+e  kk+  k+rkpylh SRh hA+rRpRg+gGrF
  XP_024992319.1 134 DEPIFVNAKQYHGIIRRRRSRAKAEMAKKV-LKNRKPYLHLSRHLHAMRRPRGNGGRF 190
                     79****************************.**************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    
MNSVYYKEQD DGSSSNPMGS VPWWSGFVTR SSLEESIPLK PSSMENQTTY GRQPSDHDAD  60
QVFEKRDITQ FNMFTGDCKN PSNWQKGHVD LGFGQPAVIC GEYPYGDRCY GVFSTYGPQI  120
KGRMLLPLNL SNDDEPIFVN AKQYHGIIRR RRSRAKAEMA KKVLKNRKPY LHLSRHLHAM  180
RRPRGNGGRF LNTKKKDDCK DEIMDLKRGE NVSGSPNCTV LLLDDSNLTS PCEPNGNRSH  240
VSRSEVTSAF SIGDLKHFQI GNLSVVSLSD MMISGNTKHG FSMHGKRVSM ASGGSHYNAK  300
WGSNVLYN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06510.22e-40NF-YA family protein