PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024992338.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family MYB
Protein Properties Length: 282aa    MW: 31806.9 Da    PI: 7.4086
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024992338.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.83.9e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W +eEd+ll+d++++ G g+W++ ++  g+ R++k+c++rw +yl
   XP_024992338.1 14 RGPWAQEEDDLLIDYINKNGHGSWRSLPKLAGLLRCGKSCRLRWTNYL 61
                     89******************************99************97 PP
2Myb_DNA-binding53.55.5e-1767112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++TteE++l +++++ lG++ W++Ia+ ++ gRt++++k+ w+++l
   XP_024992338.1  67 RGPFTTEEEKLVIQLHAILGNR-WAAIAAQLP-GRTDNEIKNLWNTHL 112
                      89********************.*********.************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    
MVRAPCCEKT GLKRGPWAQE EDDLLIDYIN KNGHGSWRSL PKLAGLLRCG KSCRLRWTNY  60
LRPDIKRGPF TTEEEKLVIQ LHAILGNRWA AIAAQLPGRT DNEIKNLWNT HLRKRLVSMG  120
IDPQTHEPSC SDSRLKRPPA SPSTRHMAQW ESARMEAEAR LSMESSASVS VLLSSPNKST  180
TSTDYFLRIW HSEVGESFQN LNKGKMGCFS PASQTSESNT TIETEPKPYR EPEPRLDGVT  240
FCQGFTRASS PCEMEDSSDT SLQLFFDFAG LNDMSFLEAQ FN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.11e-111MYB family protein