PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024992340.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family TCP
Protein Properties Length: 456aa    MW: 49048.7 Da    PI: 8.8579
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024992340.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP122.26e-38852412134
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.......ssssasec.....eaesssssasn 84 
                      g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+LG+d++sk++eWL+++a ++i el+++       +      c      +++++ s+++
  XP_024992340.1  85 SGGKDRHSKVLTSKGLRDRRVRLSVTTAIQFYDLQDRLGYDQPSKAVEWLIKAASTSISELPSLdpsfsgaD------CnqnhhYHHQKQLSDDK 173
                     689*************************************************************77555430......33222333444444443 PP

             TCP  85 sssg.................kaaksaakskksqksaasalnlak.esrakarararertrekmrikn 134
                     +s g                 + +ks+a+s+ s++s+ s l+l++ e r kar+rare  ++k + k+
  XP_024992340.1 174 KSTGndtefedpnnqthqqniSVSKSSACSSTSETSKGSGLSLSRsENRIKARERAREMAAKKEKEKE 241
                     3333566666666667777777888888999999999999*****9************8888877664 PP
Sequence ? help Back to Top
Protein Sequence    Length: 456 aa     Download sequence    
MEVDEIQRQV CKFQRIGSNG SATSDNSSNP HKLATQKVNH HYLDEDGGGG GGGGGGGGGV  60
VVGGGGVGRL CGWPSSRIVR VSRASGGKDR HSKVLTSKGL RDRRVRLSVT TAIQFYDLQD  120
RLGYDQPSKA VEWLIKAAST SISELPSLDP SFSGADCNQN HHYHHQKQLS DDKKSTGNDT  180
EFEDPNNQTH QQNISVSKSS ACSSTSETSK GSGLSLSRSE NRIKARERAR EMAAKKEKEK  240
ESDIPTRVNG ISQNSSFTDL LTGGISSATV SPNNNSNPAA SPESRIHWTT PMDYFFSRPP  300
PSSSPQIIQM PQFNITAGEN HPQHHFSFLQ ENFAPVATTT SGGGVGGESY NLNFSIASSS  360
SGGGLAPGFN RGTLQSNLLS VLPHHLHHHH HLQRFQSSSM VDGSTSTNFP FFIAPTIGST  420
TPEHFPATGY DSQRLQLYGG ADGGRHSDHR KEKSKN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30210.21e-41TCP family protein