PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024992442.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

ERF

Protein Properties

Length: 210aa MW: 24206.1 Da PI: 8.4116

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024992442.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	55.2	1.8e-17	96	145	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +++GVr ++ +grW+AeI+dp + +r +lg+++t+eeAa +++ + kl+g XP_024992442.1 96 KFRGVRKRR-WGRWAAEIKDPI----TrQRLWLGTYDTPEEAAMVYDNPAIKLHG 145 89**887.******83....35*********************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 210 aa Download sequence
MSEKFSNQED SPFPKVIRIS MTDPYATDSS EDEDDYIFER WHVKKYTNEI XIQPSSKPRM 60 MPVNANMTKT RNRPCAADSK ERTIKKKKTP EDNVRKFRGV RKRRWGRWAA EIKDPITRQR 120 LWLGTYDTPE EAAMVYDNPA IKLHGAAAIT NFVLPTAIEK PPPTNTTSMS NHDPKQMSLK 180 LPLANAPPSD YQSFDSIQLD DEVAFFDDFV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	85	104	KKKKTPEDNVRKFRGVRKRR
2	86	105	KKKKTPEDNVRKFRGVRKRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G27950.1	6e-41	ERF family protein