PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024992461.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

FAR1

Protein Properties

Length: 585aa MW: 68199.4 Da PI: 6.7066

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024992461.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	63.6	5.6e-20	132	226	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 +Y++YA+evGF+vr s++k + ++g+it+r +vCskeg++ ++ + ++ r+++++r gC a+lk++ k + ++ev+k+ ++HnH l XP_024992461.1 132 MYCKYANEVGFDVRLSNKKIN-KKGRITSRFYVCSKEGRPPSKYFDsldilpGDRMIRNSNVKRSGCGACLKIHFVKeRRQYEVYKFIEQHNHML 225 8*************98887.6677**********9999889999999999**************99989************99 PP FAR1 90 a 90 + XP_024992461.1 226 F 226 7 PP

Sequence ? help Back to Top
Protein Sequence Length: 585 aa Download sequence
MDYMPFNEIF SKDIVEESSV FDSMNDCQDF DYGGDNATAV NNETIEDQAN YSMRNEDGCN 60 DRNETVSEHN DGVFVDFVDI DVASLSNEAE DYQSDAMGET NDGSKFWFPN VDAEYKPIVG 120 DEFETVESVE RMYCKYANEV GFDVRLSNKK INKKGRITSR FYVCSKEGRP PSKYFDSLDI 180 LPGDRMIRNS NVKRSGCGAC LKIHFVKERR QYEVYKFIEQ HNHMLFNKEE MRFSRSKKQL 240 HYADHKNVFH GSSSKVGITK SHRFRKAITG GVDCSGGTVR DHQNFKRDMA YFVGNKDAQM 300 LLNVMSNRRK VCPEFFFEYK CDDKELLAIF WADETVRSNY REFGDAISFD ATFRTNKHXM 360 IFVPFVAIDN HKKSVVVGVA LIHNEYVVDY TWVLKAFVKA HERQPRFVIT DQCASMKQAI 420 LIAFPESKHR LCMWHITKKL KSKINNYLQH RTPFVSEFNK LVWNVHLAPD EFEMKWLNXM 480 DSYGLRGDSW FDELYQIRES WIPAYYKDYH MSGLMKTTSR SESINAFFNV YAYFWHDLVI 540 FLRSFDNAIE SQRTTHGSLE VTTKSTVPRL VSPCKLEAHA AEVYT

Sequence ? help Back to Top

Protein Sequence Length: 585 aa Download sequence

MDYMPFNEIF SKDIVEESSV FDSMNDCQDF DYGGDNATAV NNETIEDQAN YSMRNEDGCN  60
DRNETVSEHN DGVFVDFVDI DVASLSNEAE DYQSDAMGET NDGSKFWFPN VDAEYKPIVG  120
DEFETVESVE RMYCKYANEV GFDVRLSNKK INKKGRITSR FYVCSKEGRP PSKYFDSLDI  180
LPGDRMIRNS NVKRSGCGAC LKIHFVKERR QYEVYKFIEQ HNHMLFNKEE MRFSRSKKQL  240
HYADHKNVFH GSSSKVGITK SHRFRKAITG GVDCSGGTVR DHQNFKRDMA YFVGNKDAQM  300
LLNVMSNRRK VCPEFFFEYK CDDKELLAIF WADETVRSNY REFGDAISFD ATFRTNKHXM  360
IFVPFVAIDN HKKSVVVGVA LIHNEYVVDY TWVLKAFVKA HERQPRFVIT DQCASMKQAI  420
LIAFPESKHR LCMWHITKKL KSKINNYLQH RTPFVSEFNK LVWNVHLAPD EFEMKWLNXM  480
DSYGLRGDSW FDELYQIRES WIPAYYKDYH MSGLMKTTSR SESINAFFNV YAYFWHDLVI  540
FLRSFDNAIE SQRTTHGSLE VTTKSTVPRL VSPCKLEAHA AEVYT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-65	FAR1 family protein