PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024992471.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

C2H2

Protein Properties

Length: 300aa MW: 33863.4 Da PI: 6.4557

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024992471.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.2	0.00028	180	202	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C+k+F++ L H +H XP_024992471.1 180 YRCDTCNKVFRSYQALGGHRASH 202 9***********99999998887 PP
2	zf-C2H2	11.2	0.0012	226	248	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp C k+F + L H r+H XP_024992471.1 226 HECPVCFKVFASGQALGGHKRSH 248 79*****************9999 PP

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence
MEEKHTFKSF ANGRALTSHL FNLYLHSNPH EYQNHQQDFQ SKNNTFRSVD SEVLFAGGVT 60 VTVTPNAAVA RGSVSEPESS RNATVRRRSK RIRKPEKSMI VNESSLVDPD SVSSISDFSP 120 EEDVAYCLMM LSRDRWIEEH QKPDDEFDDE EKEDENDSDT DSESEREILN VKRTPARSKY 180 RCDTCNKVFR SYQALGGHRA SHKKIKLSHH NSNHQTQNVS MEDKIHECPV CFKVFASGQA 240 LGGHKRSHFT ASSSAITAAK PVTKQRINLI DLNLPATIED DDVSQIEVSA VSDGEFVKPH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60580.1	1e-46	C2H2 family protein