PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024992497.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

C3H

Protein Properties

Length: 300aa MW: 34821.1 Da PI: 8.9087

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024992497.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	36.3	9.2e-12	169	194	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 y C+++ +tG+C yGd+CkF H+ XP_024992497.1 169 YQPDVCKDYKQTGYCGYGDSCKFLHD 194 66789********************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence
MAENGEEKQE GRIYFRKPLK NNNISIQTKG DEASAVVMKK KLPAPPDNKL HFATSRWFSK 60 QLEKASMFQY DSSKEIQVHN DSRATATLET ETEFSRDSRS IRERVLKRAD EALKGKQKSN 120 YNDDHKLYKG IHAYTDHKAG FRREQTVSSG FHGPLRAPVH IRTSTRFDYQ PDVCKDYKQT 180 GYCGYGDSCK FLHDRGDYKS GWQLENQWNE SEKERKRKLA FKDEDDDDDV EDEDDGLPIA 240 CFICRDPFVN PVATNCKHYF CEKCALKHHG KKKSCYVCNR PTHGIFNSAH EIRKKMKMGK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01350.1	1e-126	C3H family protein