PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024992508.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family ARF
Protein Properties Length: 375aa    MW: 42515.4 Da    PI: 9.1495
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024992508.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3567.3e-181031692998
                     -..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3  29 kkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                     ++  +++l+ +d +gr W++++ yr++++r+v+t GWk+Fv+++gL +gD ++F   +  + el+++++r
  XP_024992508.1 103 PQ-PTQELIAKDFHGRAWSFTHVYRGRPRRHVITHGWKKFVRQKGLVAGDALIFA--RGPNNELRIGIRR 169
                     33.34589***********************************************..4488999999998 PP
2Auxin_resp46.91.2e-16192269383
      Auxin_resp   3 haastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     +a+ +++ F v+YnPra    F v ++k++ka   ++s Gm + m++ +   +e +  G++v  ++++  +Wp S+Wrs+k
  XP_024992508.1 192 QALYKNKEFVVYYNPRA--FPFLVGLQKYLKADAYNFSSGMNVIMRLKGGKNAENEKRGVIVEQTTIS-AEWPTSEWRSIK 269
                     57778999********8..67******************************************99955.5********985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    
MGSSHIGSND EVQKELFMAC AGPFVNVPVQ GERVFYFPQG HIEQFQEEDS ANQKLIRQQF  60
SKLDLPNKML CRVVDSSLKV DHETDEVYAI IKLCPSQEDY SQPQPTQELI AKDFHGRAWS  120
FTHVYRGRPR RHVITHGWKK FVRQKGLVAG DALIFARGPN NELRIGIRRL VQRIPVILSN  180
ESQIQVLAST SQALYKNKEF VVYYNPRAFP FLVGLQKYLK ADAYNFSSGM NVIMRLKGGK  240
NAENEKRGVI VEQTTISAEW PTSEWRSIKV QWNIPSRRSL IQMPERVSAW QLEPVLEDVR  300
SHVGEASSSR NTRLQICDDG PTYCANAIWN ESLHSIPSSS VGLSDKGKEC KKPKVLRLFG  360
VDISVTTSCS TSETN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46530.35e-86ARF family protein