PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024992515.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family HD-ZIP
Protein Properties Length: 161aa    MW: 18987.7 Da    PI: 10.1284
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024992515.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.52.7e-191465556
                    SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox  5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                     +f++eq++ Le+ F+++++++ +++ ++Ak lgL+ rqV +WFqN+Ra++k
  XP_024992515.1 14 KRFSQEQIKSLEAIFQSESKLQPRKKLQIAKDLGLQPRQVAIWFQNKRARWK 65
                    68*************************************************9 PP
2HD-ZIP_I/II114.18.4e-3712103293
     HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                     +++r+s+eq+k+LE  F++e+kL+p++K ++a++Lglqprqva+WFqn+RAR+k+kql +dy+ L+ +yd+l+++ + L++++++L+ +lk+
  XP_024992515.1  12 QQKRFSQEQIKSLEAIFQSESKLQPRKKLQIAKDLGLQPRQVAIWFQNKRARWKSKQLQTDYNILRLSYDSLSSRFDILQTQNQSLTLQLKK 103
                     789************************************************************************************99987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    
MMLDSELKII QQQKRFSQEQ IKSLEAIFQS ESKLQPRKKL QIAKDLGLQP RQVAIWFQNK  60
RARWKSKQLQ TDYNILRLSY DSLSSRFDIL QTQNQSLTLQ LKKLQQEMEK KATSSSNKSM  120
GIVVSDADSI KPPVEQSSMI HGHRDKWDDL DMSNQWWESW C
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.27e-38HD-ZIP family protein