PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024992552.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family M-type_MADS
Protein Properties Length: 196aa    MW: 21944.2 Da    PI: 7.5103
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024992552.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF51.71.1e-162360845
                    HHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
          SRF-TF  8 nrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                       vtfskR  g++ KA+ELS+LC++e a+i+fs+t k
  XP_024992552.1 23 SLAVTFSKRHSGLFSKANELSTLCGVELAIIMFSPTKK 60
                    557********************************976 PP
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    
MTPAKKTKGR QKIEMTKILD EKSLAVTFSK RHSGLFSKAN ELSTLCGVEL AIIMFSPTKK  60
PISYGVPSVE AILDRYMEQL PPPDPRMSQY MESYRNASIQ QLNSELTDMI AQTQAEKKTG  120
EELDLIKKDR QDRHWWNAPI ETLDAEQLEK LKAAMLELRN SAEKQAERLM VEAATTSTPI  180
IPGFRSMGAD GAGPSN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.16e-46M-type_MADS family protein