PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024992576.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

MIKC_MADS

Protein Properties

Length: 216aa MW: 24738.3 Da PI: 8.809

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024992576.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	95.6	2.1e-30	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien + rqvtfskRrng+lKKA+ELSvLCdaev++iifs++gklye++s XP_024992576.1 9 KRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVSLIIFSPRGKLYEFAS 59 79***********************************************86 PP
2	K-box	70.8	4.3e-24	78	170	5	97
K-box 5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 +++s + ++ ++l++e a + k++e L+ +R+llGe+L++ s++eL q+eqqLe+s +R++K++++ eqi++lq kek+l en +L++k XP_024992576.1 78 TDNSSSVEDVQYLKHETATMAKKVELLEVAKRKLLGEGLGTSSIEELVQIEQQLERSACIVRARKMQVYNEQIQQLQAKEKMLAAENAMLNEK 170 4556788899********************************************************************************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 216 aa Download sequence
MVRGKTQMKR IENATSRQVT FSKRRNGLLK KAFELSVLCD AEVSLIIFSP RGKLYEFASS 60 SMQETIERYR SHAKDVQTDN SSSVEDVQYL KHETATMAKK VELLEVAKRK LLGEGLGTSS 120 IEELVQIEQQ LERSACIVRA RKMQVYNEQI QQLQAKEKML AAENAMLNEK CLVQTDQVTA 180 EIRADSRIID NGENSDVETE LFIGPPERRI KQRWLK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45660.1	4e-77	MIKC_MADS family protein