PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024992626.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family YABBY
Protein Properties Length: 224aa    MW: 24742.1 Da    PI: 7.6365
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024992626.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY234.32.9e-72171883170
           YABBY   3 vfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkee..lleelkveeenlksnvekeesasts 95 
                     +   seq+CyvqC+fC+t+lavsvP +slf++vtvrCGhCt+llsvn++      +a     ++  ++  l ++  ++++ ++++  + ++   +
  XP_024992626.1  17 LSPPSEQLCYVQCDFCDTVLAVSVPCSSLFTTVTVRCGHCTNLLSVNMRALLLPASAAAVAANAAANQlhLGHNFFSHQNIMEEMRNTPSNLFIN 111
                     56789****************************************99887774444444333333333213344444444444443333333333 PP

           YABBY  96 vssekl..senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                     +++ +      + +e+p++p ++rPPekrqrvPsaynrfikeeiqrika+nPdishreafsaaaknWahfP+ihfgl
  XP_024992626.1 112 QPNPNApfAPVRVDELPKPPVANRPPEKRQRVPSAYNRFIKEEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGL 188
                     333332226677899***999******************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    
MSSSAAFSPD HHHHHHLSPP SEQLCYVQCD FCDTVLAVSV PCSSLFTTVT VRCGHCTNLL  60
SVNMRALLLP ASAAAVAANA AANQLHLGHN FFSHQNIMEE MRNTPSNLFI NQPNPNAPFA  120
PVRVDELPKP PVANRPPEKR QRVPSAYNRF IKEEIQRIKA GNPDISHREA FSAAAKNWAH  180
FPHIHFGLMP DQPVKKPNVC QQEGEDLLMK DGFLTTANVG VSPY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45190.17e-80YABBY family protein