PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024992644.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family M-type_MADS
Protein Properties Length: 225aa    MW: 24083.4 Da    PI: 6.5309
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024992644.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF50.92e-161763349
                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    i ++    vtfskRr gi+ K +EL +LC+ae a+++fs+tgk y +
  XP_024992644.1 17 ITDDKSLAVTFSKRRSGIFRKFSELGTLCGAETAIVVFSPTGKPYSF 63
                    55666678***********************************8887 PP
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    
MTPKKTKGRQ KIEIVKITDD KSLAVTFSKR RSGIFRKFSE LGTLCGAETA IVVFSPTGKP  60
YSFGHPDVET IVDRYLVSSH FVESHPNANT EALTRQLADM LGHLEVQEKI GKDLDEIKKA  120
RERSYWWGAP IETLGFEELE KLKVALLELK KDSGKQAERL MLEAANATLS IPVDGVGPST  180
GVDGAGSSTP TIPVFGSIGV DGAGPSTPTI PIFGSTGVDG VGPSN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-38M-type_MADS family protein