PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024992720.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family NAC
Protein Properties Length: 333aa    MW: 37330.7 Da    PI: 8.8627
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024992720.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM172.71.1e-53151421128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     lppGfrFhPtdeelvv+yLkkk+++ +l++  +i+evd+yk++Pw+Lp+k++ +++ewyfFs+rd+ky++g+r+nra++sgyWkatg+dk++ls+
  XP_024992720.1  15 LPPGFRFHPTDEELVVYYLKKKASSIPLPV-AIIAEVDLYKFDPWELPSKATFGDQEWYFFSPRDRKYPNGTRPNRAATSGYWKATGTDKPILSS 108
                     79****************************.88***************988899***************************************98 PP

             NAM  96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      ++++vg+kk Lvfy g+ pkg kt+W+mheyrl
  XP_024992720.1 109 rGDQKVGVKKALVFYGGKPPKGIKTNWIMHEYRL 142
                     67788***************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    
MESTDSSTCS QYPNLPPGFR FHPTDEELVV YYLKKKASSI PLPVAIIAEV DLYKFDPWEL  60
PSKATFGDQE WYFFSPRDRK YPNGTRPNRA ATSGYWKATG TDKPILSSRG DQKVGVKKAL  120
VFYGGKPPKG IKTNWIMHEY RLVDNASFKS PIVNLANRKG SLRLDEWVLC RIYKKNNGSR  180
PTERDTTDHH DYIENMMAAN SSKATNPSGS LIDHQETSSF FEILNNEDGS RIQQTNDSII  240
SKLASSSSSL KSMVFNPKKR SFPTTHYWNL DSTEKRFNSE DEMNGMMDGS GSFVSLLNPI  300
QQAGIGGFHP NTVLGSIGDS AFGYQLSSGN WNT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61110.12e-99NAC family protein