PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024992804.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

M-type_MADS

Protein Properties

Length: 196aa MW: 21854.1 Da PI: 6.5538

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024992804.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	48.5	1.1e-15	23	60	8	45
HHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 8 nrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 vtfskR gi+ KA+ELS+LC++e a+i++s+t k XP_024992804.1 23 SLAVTFSKRHSGIISKANELSTLCGVELAIIMLSPTKK 60 557********************************976 PP

Sequence ? help Back to Top
Protein Sequence Length: 196 aa Download sequence
MTPAKKTKGR QKIEMTKILD EKSLAVTFSK RHSGIISKAN ELSTLCGVEL AIIMLSPTKK 60 PISYGVPSVE AILDRYMEQL PPPDPRMSQY MESYRNATIQ QLNSELTDMI SQTQAEKKTG 120 EELDLIKKER QDRHWWNGPI DTLDAEQLEK LKAAMLELRN NAEKQAERLM VEAATTSTPI 180 FPGFGSMGAD GAGPSN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60440.1	1e-43	M-type_MADS family protein