PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024992839.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

HB-other

Protein Properties

Length: 1603aa MW: 181255 Da PI: 5.0551

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024992839.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57	3.4e-18	27	82	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR+ t+ ql Le+ +++++yps+++r++L+++lgLt+rq ++WF+ rR k+kk XP_024992839.1 27 PKRQMKTPFQLGMLEKTYASEMYPSEATRAKLSESLGLTDRQLQMWFCHRRLKDKK 82 69****************************************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 1603 aa Download sequence
METGSEGESN RNMNDNNNGQ SDGSKKPKRQ MKTPFQLGML EKTYASEMYP SEATRAKLSE 60 SLGLTDRQLQ MWFCHRRLKD KKEGIVKRPL ADGALGERIE SMRSSKQELM VVERGGGSDH 120 GSRSRSRHES WSRSGSGSGS GSESDSSQFN EPLVHSRAYE LTQQKIMLRR IIDCVEVQLG 180 EPLREDGPAL GMEFDELPPG AFGTPIVVKK RHGQTRHSYD GNLFEEPDPR PIKVEVAGLL 240 EPGVSTIKPE PYGVVSRLYD SPVGYPSDQR LVIQNGQLPQ PYVGSGQLKG VGLLTPKGEM 300 GHLSSPIKDD DFIQPNEEVM QMWRKRKSDD AFSVRGEGEK RMRKELEKQD LMRKKREEQM 360 RKEMEKQDRE RRKEEERMMR EKQRQEERFQ REEKREIERR EKFLQKESLK AERRRQKEEL 420 RREKEAIKLK AAIEKAAARK IAKESMELIE DERLELLELA ASSKGLPSIV SLDYETLQNL 480 DSFRDLLCVF PPKSVQVRLK RPFSIHPWID SEENVGNLLM VWRFCMTFAD VLGLWPFTLD 540 EFVQDLHDYD SRLLGEVHIA LLKLIIRDIE DVARTPSGGP GTNQYTVANP EGGHPQIVEG 600 AYMWGFDIRN WLKHLNPLTW PEVLRQFALS AGFGPQLKKD KAKRSCLPEN DEGKGCEDVI 660 TMLRNGSAAE NAATLMQEKG VHLQRKSRHR LTPGTVKFAA YHVLCLEGSK GLNVLELAEK 720 IQKTGLRDLT TSKTPDASIS VALSRDPILF ERIAPSTYCV RPTFRKDPAN AEEVISSAKE 780 KIQSYANGIL AGVNVEDVEK DEDYECEVAE GPEIDDFGTS STTKDANFYN EEAKTAVGED 840 VDLDMKNEFE NAGVGVSSID QGSSEIDERK SGEPWVQGLT EGEYSDLCVE ERLNALVALI 900 GIANEGNIIR LVLEDRLDAA TAVRKQMWAE AQLDKKRLKE ECITKFQDSS LMAAAAEGGQ 960 SPLMPTIDSK TNDGLLQMAQ DGSMGQTTAQ VHNNGYNTTE RLRLQLKAFI GHKAEEMYVY 1020 RSLPLGQDRR RNRYWQFVAS SSKHDPGSGR IFVELQNGCW RLIDSEEAFD ALLLSLDTRG 1080 ARESHLHVML QKIEMSFKEN IRRNAGRAEN TDRSGRFSRI EAGPNVASDG SPNSTVCVSG 1140 SDSLEPSPSF NIELRRNELE KKNAMKRYRD LESWMWKECL YSSNLSAMVH GKQRCFPVQG 1200 VCDFCHESYC YEKDICPRCY RSFSTFGDRL SYPESEYQEN VPKTNDQCDW DITHPQRIRL 1260 IKSLLTFLEA SVPSEALQSS WTGNNREAWG SKLHGSSSPE DLLQVLTWFE SVVRRDYLSL 1320 NFETTEELLG TSGLSQRAAS GSGSVPVLSW IPQTTAAVTL RIFELDASIS YSPEQKAELH 1380 MGDELNHMMV EKPPLKFTFL KNIGKTITDM DHSKPMKQGA RGGGGGGSRG GKWQKRAAGA 1440 ISVSGSRQNL KDNVTMSQAI KQQTHGRGRR TVRRRRIEKT VEEEEEPIRN FIDEEWVQEP 1500 VDKMETGNTN FRISEEDEEE ESESEDEGEE QRVGFEMANE ESSGFGVANN ESRWASMEMS 1560 EEEGFEVVEE DDEMMNDDYV DGNDGRNFKV EDSDSFGSGD YSD

Sequence ? help Back to Top

Protein Sequence Length: 1603 aa Download sequence

METGSEGESN RNMNDNNNGQ SDGSKKPKRQ MKTPFQLGML EKTYASEMYP SEATRAKLSE  60
SLGLTDRQLQ MWFCHRRLKD KKEGIVKRPL ADGALGERIE SMRSSKQELM VVERGGGSDH  120
GSRSRSRHES WSRSGSGSGS GSESDSSQFN EPLVHSRAYE LTQQKIMLRR IIDCVEVQLG  180
EPLREDGPAL GMEFDELPPG AFGTPIVVKK RHGQTRHSYD GNLFEEPDPR PIKVEVAGLL  240
EPGVSTIKPE PYGVVSRLYD SPVGYPSDQR LVIQNGQLPQ PYVGSGQLKG VGLLTPKGEM  300
GHLSSPIKDD DFIQPNEEVM QMWRKRKSDD AFSVRGEGEK RMRKELEKQD LMRKKREEQM  360
RKEMEKQDRE RRKEEERMMR EKQRQEERFQ REEKREIERR EKFLQKESLK AERRRQKEEL  420
RREKEAIKLK AAIEKAAARK IAKESMELIE DERLELLELA ASSKGLPSIV SLDYETLQNL  480
DSFRDLLCVF PPKSVQVRLK RPFSIHPWID SEENVGNLLM VWRFCMTFAD VLGLWPFTLD  540
EFVQDLHDYD SRLLGEVHIA LLKLIIRDIE DVARTPSGGP GTNQYTVANP EGGHPQIVEG  600
AYMWGFDIRN WLKHLNPLTW PEVLRQFALS AGFGPQLKKD KAKRSCLPEN DEGKGCEDVI  660
TMLRNGSAAE NAATLMQEKG VHLQRKSRHR LTPGTVKFAA YHVLCLEGSK GLNVLELAEK  720
IQKTGLRDLT TSKTPDASIS VALSRDPILF ERIAPSTYCV RPTFRKDPAN AEEVISSAKE  780
KIQSYANGIL AGVNVEDVEK DEDYECEVAE GPEIDDFGTS STTKDANFYN EEAKTAVGED  840
VDLDMKNEFE NAGVGVSSID QGSSEIDERK SGEPWVQGLT EGEYSDLCVE ERLNALVALI  900
GIANEGNIIR LVLEDRLDAA TAVRKQMWAE AQLDKKRLKE ECITKFQDSS LMAAAAEGGQ  960
SPLMPTIDSK TNDGLLQMAQ DGSMGQTTAQ VHNNGYNTTE RLRLQLKAFI GHKAEEMYVY  1020
RSLPLGQDRR RNRYWQFVAS SSKHDPGSGR IFVELQNGCW RLIDSEEAFD ALLLSLDTRG  1080
ARESHLHVML QKIEMSFKEN IRRNAGRAEN TDRSGRFSRI EAGPNVASDG SPNSTVCVSG  1140
SDSLEPSPSF NIELRRNELE KKNAMKRYRD LESWMWKECL YSSNLSAMVH GKQRCFPVQG  1200
VCDFCHESYC YEKDICPRCY RSFSTFGDRL SYPESEYQEN VPKTNDQCDW DITHPQRIRL  1260
IKSLLTFLEA SVPSEALQSS WTGNNREAWG SKLHGSSSPE DLLQVLTWFE SVVRRDYLSL  1320
NFETTEELLG TSGLSQRAAS GSGSVPVLSW IPQTTAAVTL RIFELDASIS YSPEQKAELH  1380
MGDELNHMMV EKPPLKFTFL KNIGKTITDM DHSKPMKQGA RGGGGGGSRG GKWQKRAAGA  1440
ISVSGSRQNL KDNVTMSQAI KQQTHGRGRR TVRRRRIEKT VEEEEEPIRN FIDEEWVQEP  1500
VDKMETGNTN FRISEEDEEE ESESEDEGEE QRVGFEMANE ESSGFGVANN ESRWASMEMS  1560
EEEGFEVVEE DDEMMNDDYV DGNDGRNFKV EDSDSFGSGD YSD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	76	83	RRLKDKKE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44180.1	0.0	HB-other family protein