PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024992934.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

LBD

Protein Properties

Length: 232aa MW: 25735.2 Da PI: 8.7188

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024992934.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	133	1.2e-41	42	141	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrr+Ca++C+++pyf ++p+kfa vhk+FGasnv+kll ++pe++r da++slvyeA++r+rdPvyG++g i++lq+q+++l++el+ XP_024992934.1 42 PCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVSKLLMEVPENQRADAANSLVYEANVRLRDPVYGCMGAISSLQHQVQSLQSELN 136 7********************************************************************************************** PP DUF260 96 llkee 100 ++++e XP_024992934.1 137 AVRAE 141 *9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 232 aa Download sequence
MSRERERFDE IGKKIKRDID ASFQLGRRHM LGLPGTLNTI TPCAACKLLR RRCAQECPFS 60 PYFSPHEPQK FASVHKVFGA SNVSKLLMEV PENQRADAAN SLVYEANVRL RDPVYGCMGA 120 ISSLQHQVQS LQSELNAVRA EILRYKYSET THHDHHHHII PSTHHLALFS TGAVSVTPPP 180 PQQQRPPPSP LPPPPPPPPP PPPASSSSSM YTPPSTTTDY STITNDNVSY FG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40470.1	4e-79	LBD family protein