PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024993004.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

bHLH

Protein Properties

Length: 228aa MW: 26017.5 Da PI: 4.5631

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024993004.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.3	2.4e-12	61	106	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + ++ErrRR++++s++ eLr+l+Pk + l+K +i + A++YIk+Lq XP_024993004.1 61 NLKAERRRREKLKSRMLELRSLVPKI-----TNLNKETIITDAIDYIKELQ 106 5689*******************6.....68***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 228 aa Download sequence
MEFSNLFDLQ IPPPPPPVVE ETHTSFERVI CRNSRRQQYH DDDDQDDDDD TNHEGKFKSK 60 NLKAERRRRE KLKSRMLELR SLVPKITNLN KETIITDAID YIKELQSSVT DLQNEIVEME 120 AEMAHEQPSE IIQVPSEEKM ENWGIESDVE VTRIDENKSW MKIVFGKKAG GFTKLIEAMS 180 VLGVELVDTS VTATKGALLV TSCIKGTQGK MLDSEQVQEV LVEIIKAI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	65	70	ERRRRE
2	66	71	RRRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21330.1	6e-28	bHLH family protein