PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024993030.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family GRAS
Protein Properties Length: 630aa    MW: 68664.2 Da    PI: 7.454
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024993030.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3182e-972636292373
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                     ++lL ++A ++++g++  a ++L+r+++ ++  g+p qRl +y++ AL++r++          + +++se   +e++ +++l+++ sP++k++++
  XP_024993030.1 263 KQLLSDAASVITDGKTDSAVEILTRVNQVSNALGTPEQRLSFYMAAALRSRMNA---------NLTTASELYGKEHILSTQLLYDKSPCFKLAFM 348
                     58999************************************************9.........4555555569********************** PP

            GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLa.sRp...egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrle 187
                     +aN++Ile  + e+++H++Dfdi+qG+Q++ Ll+++a +R+   e p sl +T++ +  +g +e+l+ +g+ L+++ ++lgv f++nvl   +l+
  XP_024993030.1 349 AANNTILELGQAEKKLHVVDFDIGQGVQYVYLLHEIAaARKvdkETPISLTLTTFTDFGNGGAERLKLVGDGLRSLSNKLGVLFSYNVL-DFKLS 442
                     ************************************977888844455*********9999**************************95.669** PP

            GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseer 282
                     dl+ e L v+++E+laVn++++l +l+desv++++ rdevL+ vk++sP vv+v+eqe++ n++s  +r+ +a++yy a+++sl+a++p+e+ er
  XP_024993030.1 443 DLSKEGLTVENDEVLAVNFAFKLNKLPDESVTTDNLRDEVLRRVKRMSPAVVTVMEQELNANTASISARVNDAFSYYIAFLNSLDATIPKENPER 537
                     *********************************************************************************************** PP

            GRAS 283 ikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk..sdgyrveeesgslvlgWkdrpLvsvSaW 373
                     +k+E+  l+r+i n vaceg++r+er+e ++kWr+r+++aGF + p+s+ +a++  + l+     + g++v+e+sg + +gW +r+L ++SaW
  XP_024993030.1 538 VKIEEG-LSRRIFNSVACEGRDRVERCEVFGKWRARMTMAGFVSKPVSQLTAESLMSKLNSATrgNPGFTVKEDSGGINIGWLGRTLNVASAW 629
                     ******.******************************************9888877777766657899************************* PP
Sequence ? help Back to Top
Protein Sequence    Length: 630 aa     Download sequence    
MSSGFSGGFP DFFNVNGGGV NNVAGRSMSM MNVNNVNRSD YRSQLAGILS DSSSMVSGSR  60
SDLIGKRSLA EFQQRRQEYS VYLRNVKQRG YNQQASLVPP TDFLVSPEVS SVSNISSSSL  120
SSVPRYGVPV LQQVRPPTAQ AFNLGNGNFN GVMGSYQHNN RSNFSRISLP NLAAKQSPAT  180
QETEGKMMKR LQELEKQLLL DDEDGENDVS GVTNSEWSET IQNILGSTPV QKPDNTVSPS  240
PTSSSSSSCA SSSASPATTV CPKQLLSDAA SVITDGKTDS AVEILTRVNQ VSNALGTPEQ  300
RLSFYMAAAL RSRMNANLTT ASELYGKEHI LSTQLLYDKS PCFKLAFMAA NNTILELGQA  360
EKKLHVVDFD IGQGVQYVYL LHEIAAARKV DKETPISLTL TTFTDFGNGG AERLKLVGDG  420
LRSLSNKLGV LFSYNVLDFK LSDLSKEGLT VENDEVLAVN FAFKLNKLPD ESVTTDNLRD  480
EVLRRVKRMS PAVVTVMEQE LNANTASISA RVNDAFSYYI AFLNSLDATI PKENPERVKI  540
EEGLSRRIFN SVACEGRDRV ERCEVFGKWR ARMTMAGFVS KPVSQLTAES LMSKLNSATR  600
GNPGFTVKED SGGINIGWLG RTLNVASAWH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.11e-121GRAS family protein