PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024993043.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

LBD

Protein Properties

Length: 198aa MW: 21326.1 Da PI: 8.6055

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024993043.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	88.6	7.9e-28	2	102	1	96
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C +C+vlr++C ++Cvl+p++ p+++++++ +v k+FG++ ++++++++p ++r+++++sl++eA r+ +Pv+Ga+g++++++++l+q+ XP_024993043.1 2 SCHGCRVLRKRCDDSCVLRPCLdwidsPEAKARATLFVSKFFGRTDLINFISSVPIHKRNALFQSLLFEAVGRTVNPVNGAIGLLSTGNWHLCQA 96 6*********************************************************************************************9 PP DUF260 91 kaelal 96 ++ ++l XP_024993043.1 97 AVRTVL 102 988766 PP

Sequence ? help Back to Top
Protein Sequence Length: 198 aa Download sequence
MSCHGCRVLR KRCDDSCVLR PCLDWIDSPE AKARATLFVS KFFGRTDLIN FISSVPIHKR 60 NALFQSLLFE AVGRTVNPVN GAIGLLSTGN WHLCQAAVRT VLAGGTPTVL SNSFHHIPEI 120 DGRSGVSETG GSWSAMMIRN QIPSGKCSIT NAAPLANJKV AXSAAGDEQX FSASNISKVL 180 MSFRCSDGEE PKLLNLLV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37540.1	1e-51	LBD family protein