PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024993082.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family M-type_MADS
Protein Properties Length: 219aa    MW: 24584.4 Da    PI: 10.0013
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024993082.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF68.27.6e-222063649
                    HHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  6 ksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    k   qvtfskRr g++KKA+EL++LC++e+a+++fs+ gk++ +
  XP_024993082.1 20 KNHLQVTFSKRRSGLFKKASELCTLCGVEIAIVVFSPAGKVFSF 63
                    56679************************************988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    
MAKKPSLGRQ KIKIAKIQIK NHLQVTFSKR RSGLFKKASE LCTLCGVEIA IVVFSPAGKV  60
FSFGHPKVES IVDRFLTRNP KLNSTSLHVI EAHRIASIPE LNMQLTHLLN ELEVEKKRSE  120
TLDEMRKASQ SQFWWEAPIA DLTLHELEQL KDSMEELKKT VAIQANKLFV ENSNSVPIFG  180
ANNNIRGGLD HYDIKPPPII SSSSSASHIH NYGYGLGLF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.16e-53M-type_MADS family protein