PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024993163.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family C3H
Protein Properties Length: 146aa    MW: 16698.7 Da    PI: 9.5758
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024993163.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.92.6e-1194119126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     y    C+++  tG+C yGd+CkF H+
  XP_024993163.1  94 YQPDVCKDYKNTGYCGYGDSCKFLHD 119
                     66789********************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    
MAEKPEEEQP NVEKVCNFMK PLKNKNKRKG NHEENIGERV ITLADEALKG KQKSNVAGFR  60
RDDQMIGGSK AAGGVHGPLR APSGYIRAST RFDYQPDVCK DYKNTGYCGY GDSCKFLHDR  120
GDYKTGWQID KQWDEAENAR KKRNWR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.15e-45C3H family protein