PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024993182.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

TCP

Protein Properties

Length: 234aa MW: 27089.9 Da PI: 6.4256

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024993182.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	109.9	3.8e-34	26	134	3	89
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...........ssssaseceaesssssas.ns 85 g+kdrhsk++T++g+RdRRvRl a++a++f+d+qd+LG+d++sk+i+WL+++ak+ai++l++ ++s+a + +++++++++s ++ XP_024993182.1 26 GRKDRHSKVCTSKGLRDRRVRLAADTAIQFYDVQDRLGYDRPSKAIDWLMKEAKTAIDALNNGhhdhdllttflNTSAAFHRTSGERNQQVStHN 120 89************************************************************978888887777555553332222222222123 PP TCP 86 ssg..........k 89 ++g + XP_024993182.1 121 QIGsfnnyplefiS 134 33344444444431 PP

Sequence ? help Back to Top
Protein Sequence Length: 234 aa Download sequence
MRMRQNRAQQ GEIIEVEGGR IVRSLGRKDR HSKVCTSKGL RDRRVRLAAD TAIQFYDVQD 60 RLGYDRPSKA IDWLMKEAKT AIDALNNGHH DHDLLTTFLN TSAAFHRTSG ERNQQVSTHN 120 QIGSFNNYPL EFISSRNKRH ENPIEELIIP MDFTWNPSYK PGDGFAVVDR EPLQSSSPAT 180 IQTFNNEFVD DESFLGFDFQ QENHLQEEEN RNLLSKNYRF SGTSILHYED QQQS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15030.2	1e-39	TCP family protein