PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024993207.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

WRKY

Protein Properties

Length: 335aa MW: 36719.4 Da PI: 6.6513

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024993207.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	104.2	7e-33	176	233	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s++prsYYrCt+++C+vkk+vers +dp++v++tYeg+Hnh+ XP_024993207.1 176 EDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCTVKKRVERSYQDPSTVITTYEGQHNHH 233 8********************************************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 335 aa Download sequence
MSEDQRDLYY HDPFNDDQRN SETLYSFFGP DSTIRGDSSP PIPQRFHDYM GLTHFFNGST 60 DYNTPATAFG YSSSSSQVGF VLQHDQKPMI DPGNLVGGAE TIPVTPNSSS VLSSSTEAAD 120 DEHELSQGKK DNQLKGVSED GGDSTNKVNK QKKKEEKKQR EPRFAFMTKS DIDHLEDGYR 180 WRKYGQKAVK NSPYPRSYYR CTTQKCTVKK RVERSYQDPS TVITTYEGQH NHHLPATLRG 240 NVGGGMLYPP SMMAAQGAMM AGAGGSSFPH EFLAHMPHGF YNSGGGGGGG GGGGSSTGGG 300 SIYQQSALTP FQQLQIPDYG LLQDMVPSMT FKQEP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G29860.1	2e-50	WRKY family protein