PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024993233.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family M-type_MADS
Protein Properties Length: 182aa    MW: 20223.1 Da    PI: 4.912
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024993233.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF48.61e-151046945
                    HHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
          SRF-TF  9 rqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                      vtfskR  gi+ KA+ELS+LC++e a+i++s+t k
  XP_024993233.1 10 LAVTFSKRHSGIISKANELSTLCGVELAIIMLSPTKK 46
                    57********************************976 PP
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    
MTKILDEKSL AVTFSKRHSG IISKANELST LCGVELAIIM LSPTKKPVSY GVPSVEAILD  60
RYMEQLPPPD PSMSQYMESY RNANIQQLNR ELTNMVAQTQ SEKKTGEELD LIKKDRQDRN  120
WWNAPIETLD VEQLEKLKVA MLELRNNAEK QAERLTVEAA TTSTPIIPGF GSMGADGAGP  180
SN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.16e-38M-type_MADS family protein