PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024993270.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family ARF
Protein Properties Length: 665aa    MW: 73669 Da    PI: 8.4046
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024993270.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.91.9e-23190291199
                     EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     f+k lt sd++++g +++p++ ae++      + +++ s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv+ ++L  gD v+F   + ++
  XP_024993270.1 190 FCKSLTASDTSTHGGFSVPRRAAEDCfppldyK-QQRPSQELVAKDLHGTEWKFRHIYRGQPRRHLLTTGWSAFVNKKKLVCGDAVLFL--RGDD 281
                     99****************************963.3445679************************************************..3478 PP

                     E..EEEEE-S CS
              B3  90 felvvkvfrk 99 
                     + l+++++r+
  XP_024993270.1 282 GVLRLGIRRA 291
                     8899999997 PP
2Auxin_resp94.71.4e-31314408182
      Auxin_resp   1 aahaastksvFevvYnPra............stseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsL 82 
                     +++++s +svF+v+YnPr             ++seF+v++++++k+l +++s+GmRfkm+feted+  r+  +G+++g++d++pvrWp+SkWr+L
  XP_024993270.1 314 VVNSISRRSVFSVYYNPRHlsfafdfavqtgGSSEFIVPYNRFLKSLANSFSPGMRFKMRFETEDAGDRSRsTGIITGINDINPVRWPGSKWRCL 408
                     67999*************744444444444468*********************************999888**********************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 665 aa     Download sequence    
MQIKLLLLER ETETEKKRTM CGLIDLNTVN DELSTSLGAD SQSSPSSSSN GSGSGSGTAD  60
LLSSSPSKPV VSGSTPVVCC LELWHACAGP LISLPKKGNA VVYCPQGHLE QLQFAGDCLT  120
SGDFNLPPHV FCRVSDVKLH AESGTDDVYA QVSLIPDPQL EQKWRKGGRG VEYVEDDNGV  180
AEKSTTLHMF CKSLTASDTS THGGFSVPRR AAEDCFPPLD YKQQRPSQEL VAKDLHGTEW  240
KFRHIYRGQP RRHLLTTGWS AFVNKKKLVC GDAVLFLRGD DGVLRLGIRR ASQVKVASSL  300
PAFCSQQLND FATVVNSISR RSVFSVYYNP RHLSFAFDFA VQTGGSSEFI VPYNRFLKSL  360
ANSFSPGMRF KMRFETEDAG DRSRSTGIIT GINDINPVRW PGSKWRCLMV RWDCVEVTMQ  420
NRVSPWEIER CGLVSEVGSF VTPLTKRSRT GFPSLKSDFP VLKDRTTSDF GESMRFHKVL  480
QGQEIYGFYR SSEINDVRNV GFGESLRFNR VLQGQEIMSN TQFGERIPSS GNLWTHPSTF  540
LHPLSSSSSP SSVLRFPQSI SQGPNDYPAH YTDNLKPLNR QIHQDFFSPL KGRQEEPVST  600
VRNSCRLFGF SLTEGSNGTK ASHCPNGDDR VIPKGPIVNT KVGGSCTNER VHQWCRSTDG  660
CLQGL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33860.11e-178ARF family protein