PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024993273.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family ARF
Protein Properties Length: 652aa    MW: 72217.4 Da    PI: 8.482
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024993273.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3741.8e-23190291199
                     EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     f+k lt sd++++g +++p++ ae++      + +++ s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv+ ++L  gD v+F   + ++
  XP_024993273.1 190 FCKSLTASDTSTHGGFSVPRRAAEDCfppldyK-QQRPSQELVAKDLHGTEWKFRHIYRGQPRRHLLTTGWSAFVNKKKLVCGDAVLFL--RGDD 281
                     99****************************963.3445679************************************************..3478 PP

                     E..EEEEE-S CS
              B3  90 felvvkvfrk 99 
                     + l+++++r+
  XP_024993273.1 282 GVLRLGIRRA 291
                     8899999997 PP
2Auxin_resp115.45.2e-38314395182
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                     +++++s +svF+v+YnPr ++seF+v++++++k+l +++s+GmRfkm+feted+  rr +G+++g++d++pvrWp+SkWr+L
  XP_024993273.1 314 VVNSISRRSVFSVYYNPRGGSSEFIVPYNRFLKSLANSFSPGMRFKMRFETEDAGDRRSTGIITGINDINPVRWPGSKWRCL 395
                     67999****************************************************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 652 aa     Download sequence    
MQIKLLLLER ETETEKKRTM CGLIDLNTVN DELSTSLGAD SQSSPSSSSN GSGSGSGTAD  60
LLSSSPSKPV VSGSTPVVCC LELWHACAGP LISLPKKGNA VVYCPQGHLE QLQFAGDCLT  120
SGDFNLPPHV FCRVSDVKLH AESGTDDVYA QVSLIPDPQL EQKWRKGGRG VEYVEDDNGV  180
AEKSTTLHMF CKSLTASDTS THGGFSVPRR AAEDCFPPLD YKQQRPSQEL VAKDLHGTEW  240
KFRHIYRGQP RRHLLTTGWS AFVNKKKLVC GDAVLFLRGD DGVLRLGIRR ASQVKVASSL  300
PAFCSQQLND FATVVNSISR RSVFSVYYNP RGGSSEFIVP YNRFLKSLAN SFSPGMRFKM  360
RFETEDAGDR RSTGIITGIN DINPVRWPGS KWRCLMVRWD CVEVTMQNRV SPWEIERCGL  420
VSEVGSFVTP LTKRSRTGFP SLKSDFPVLK DRTTSDFGES MRFHKVLQGQ EIYGFYRSSE  480
INDVRNVGFG ESLRFNRVLQ GQEIMSNTQF GERIPSSGNL WTHPSTFLHP LSSSSSPSSV  540
LRFPQSISQG PNDYPAHYTD NLKPLNRQIH QDFFSPLKGR QEEPVSTVRN SCRLFGFSLT  600
EGSNGTKASH CPNGDDRVIP KGPIVNTKVG GSCTNERVHQ WCRSTDGCLQ GL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33860.10.0ARF family protein