PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024993292.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family C3H
Protein Properties Length: 328aa    MW: 37502.7 Da    PI: 6.8345
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024993292.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.22.4e-12191216126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     y   +C+++ +tG+C yGd+CkF+H+
  XP_024993292.1 191 YQPDICKDYKETGYCGYGDSCKFMHD 216
                     67789********************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    
MAEKPEEEQP KTEQVCNFFR KPSKNKNIRK RAHDDDDEKT DEQEEPSVVI NKKKPPAPDN  60
RLHFATGSSK RSATSEQPEV DKKASIFQFD SSKEIQVQND SRATATLETE TDFSRDARAI  120
RERVLRQADE ALKGKKGNGA SDEKLYKGIH GYTDYKAGFR REQTVASEKA GGSHGPLRAS  180
AHIRVSARFD YQPDICKDYK ETGYCGYGDS CKFMHDRGDY KSGWQMEKEW DEAEKARKRK  240
LALKGDDDDD DEDDEDVEDD EDGLPFACFI CRQPFVDPVM TKCKHYFCEH CALKHHAKKK  300
RCYVCNQPTL GIFNTAFEIK KRMAATGK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.11e-151C3H family protein