PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024993376.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family ERF
Protein Properties Length: 302aa    MW: 33513.6 Da    PI: 6.5912
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024993376.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.64.2e-20115164255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+GVr+++ +g+W+AeIrdp++    +r++lg+f tae+Aa a+++a+++++g
  XP_024993376.1 115 HYRGVRQRP-WGKWAAEIRDPTK---GARVWLGTFETAEGAALAYDQAALRFKG 164
                     7********.**********965...4***********************9987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    
MDSRRFLWER KQQVAPTEDQ INKEEEVGDR DHESQISSSY RSDEWSNSNL HPHHQQIVGS  60
ATPADDIYGG FIPQHSTHHL PPPSTMIIPQ PQNQQPIAPP DDHRQQETTS TVRRHYRGVR  120
QRPWGKWAAE IRDPTKGARV WLGTFETAEG AALAYDQAAL RFKGSKAKLN FPELVIQGHS  180
ELRYITTPSS SSPNSQPPPA AAAAAAAAAA AASGGGRSRP PEELAIATNY PDLVQYAQLL  240
SSNDAQFPYF TSALYRQHPN YQSSSTSNAS YYNLDYNNPR DPAGGSDASL EQWKEGRDPN  300
QK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13330.12e-36ERF family protein