PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024993439.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family M-type_MADS
Protein Properties Length: 172aa    MW: 19554.7 Da    PI: 10.6328
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024993439.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF64.11.5e-202264749
                    HHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  7 snrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    sn  vtfskRr g++KKA+EL++LC++e+av++fs+  k++ +
  XP_024993439.1 22 SNLLVTFSKRRSGLFKKASELCILCGVEIAVVVFSPGKKVFSF 64
                    6778********************************9999887 PP
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    
MITARKSKGR QKIQMKRMVK VSNLLVTFSK RRSGLFKKAS ELCILCGVEI AVVVFSPGKK  60
VFSFGHPSVE TIVDRFLTQN PPPNSSTSQL VEAHRNANIH QLNRQLTCVN GQLEIEKNRS  120
EELSKIRKVG QDNHWWEAPI ENLGLQELEQ LKVAMEVLKK NIGEQAKRHL SE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.14e-59M-type_MADS family protein