PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024993456.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

YABBY

Protein Properties

Length: 199aa MW: 21896.8 Da PI: 6.4971

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024993456.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	197.4	6e-61	9	168	7	165
YABBY 7 seqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas....qllaaeshldeslkeelleelkveeenlksnvekeesastsvs 97 eq+CyvqC+fC+t+l+vsvP ++l++vvtv+CGhCtsllsvn++ +s +l ++ ++ + ++ +e + + + k +++s+s +s XP_024993456.1 9 DEQICYVQCGFCTTVLLVSVPCSCLSMVVTVKCGHCTSLLSVNMMRSSflplHLFSSLDN---QEEP-TVEVCREDVQVPKPALLSKHSSSPLIS 99 69****************************************9998644455555554...4333.444555555555666666677777776 PP YABBY 98 seklsenedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPk 165 s++ +e++d+++ v + v++PPekrqr+Psayn+fikeei+r+k++ P++sh++afs+aaknWah P+ XP_024993456.1 100 SSSSDEDNDDDLVLVNHvVNKPPEKRQRAPSAYNKFIKEEIRRLKTQHPNMSHKQAFSTAAKNWAHSPP 168 6666666666666565559*********************************************996 PP

Sequence ? help Back to Top
Protein Sequence Length: 199 aa Download sequence
MSALNHLLDE QICYVQCGFC TTVLLVSVPC SCLSMVVTVK CGHCTSLLSV NMMRSSFLPL 60 HLFSSLDNQE EPTVEVCRED VQVPKPALLS KHSSSPLISS SSSDEDNDDD LVLVNHVVNK 120 PPEKRQRAPS AYNKFIKEEI RRLKTQHPNM SHKQAFSTAA KNWAHSPPSQ QNEGGKSKGS 180 GNESTVMMIQ EPGSDDQPS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G23420.1	5e-52	YABBY family protein