PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024993467.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family bHLH
Protein Properties Length: 240aa    MW: 26996 Da    PI: 6.8519
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024993467.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.29.4e-11161208455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h+ +Er RR++iN+++  L+el+P +   + k +  + +L  +++YI+sLq
  XP_024993467.1 161 SHSLAERLRREKINEKLRSLQELVPGC---Y-KTMGMSVMLDVTINYIRSLQ 208
                     8*************************9...4.4477789************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    
MDDHFTLGIN SNMELFDSNA NPALGNFNSS NVSLHGFTPL SGDNFSDHHH HHRRHDHSLP  60
FMPLSDGNLQ SFNFSGDHQD GSFYAPMTHL PSNTDNMAKR ISGDESLGNP PIFSSEVTGE  120
NKANRNYGYG GKRRKKSNEA LGEKPREVVH VRARRGEATD SHSLAERLRR EKINEKLRSL  180
QELVPGCYKT MGMSVMLDVT INYIRSLQNQ IEFLSMKLSA ASMFYDFNSA EMDALDTMKV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25330.11e-48bHLH family protein